PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G086600.1.p
Common NameSb03g007270, SORBIDRAFT_03g007270
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family LBD
Protein Properties Length: 298aa    MW: 31840.7 Da    PI: 6.835
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G086600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.66.1e-314106198
                DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                           +C++C+vlr++C+++C+++p++     p++q +++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +PvyG+vg++++++
  Sobic.003G086600.1.p   4 SCNGCRVLRKGCSDNCAIRPCLqwirsPDAQGNATVFLAKFYGRAGLINLITAGPEHVRPAIFRSLLYEACGRMLNPVYGSVGLLWSGN 92 
                           6*************************99************************************************************* PP

                DUF260  85 qqleqlkaelallk 98 
                           +ql+q+++e +l++
  Sobic.003G086600.1.p  93 WQLCQAAVESVLRG 106
                           *******9988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381554.6E-901293IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.7283109IPR004883Lateral organ boundaries, LOB
PfamPF031953.0E-244102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDNCA IRPCLQWIRS PDAQGNATVF LAKFYGRAGL INLITAGPEH  60
VRPAIFRSLL YEACGRMLNP VYGSVGLLWS GNWQLCQAAV ESVLRGMPIA QPPPLAATAV  120
PPLRSCDIRH VSRREAAGRG AGAGAVDAAG PGGLHRMANS SRGQFKRSGA HRSGDSGIEL  180
VFSQPPSASS MLVDIRQAQP LNWAPRQPSH EYSASHDDDG GAVRESDSNA SVDTVDVSHV  240
SQSEPAEPPR ESHDERAAED GLDLTLGLPL AHKVEPSDVD DDQPCHRGGE PMKNWAW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1005021e-123FP100502.1 Phyllostachys edulis cDNA clone: bphyem111j02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457436.10.0hypothetical protein SORBIDRAFT_03g007270
TrEMBLC5XQW10.0C5XQW1_SORBI; Putative uncharacterized protein Sb03g007270
STRINGSb03g007270.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.14e-68LOB domain-containing protein 41